To address the global challenge of water pollution, membrane-based technologies are being used as a dignified separation technology. However, designing low-cost, reusable, freestanding and flexible membranes for wastewater treatment with tunable pore size, good mechanical strength, and high separation efficiency is still a major challenge. Herein, we report the development of a scalable, reusable, freestanding, flexible and functionalized multiwalled carbon nanotube (FMWCNT) membrane filter with tunable pore size for wastewater treatment, which has attractive attributes such as high separation efficiency (>99% for organic dyes and ∼80% for salts), permeance (∼225 L h⁻¹ m⁻² bar⁻¹), tensile strength (∼6 MPa), and reusability of both the membrane as well as contaminants separately. This FMWCNTs membrane filter has been developed by a simple vacuum-assisted filtration technique followed by the synthesis of MWCNTs using a cost-effective spray pyrolysis assisted chemical vapor deposition (CVD) technique and chemical functionalization. This study deals with understanding the rejection, retrieval, and reusability of both the membranes as well as waterborne contaminants separately. The developed membrane filter has potential utility in many applications such as wastewater treatment, food industry, and life sciences due to its robust mechanical and separation performance characteristics.