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Distance measurements between manganese(ii) and nitroxide spin-labels by DEER determine a binding site of Mn2+ in the HP92 loop of ribosomal RNA†
Ilia Kaminker,Morgan Bye,Natanel Mendelman,Kristmann Gislason,Snorri Th. Sigurdsson,Daniella Goldfarb
Physical Chemistry Chemical Physics Pub Date : 05/15/2015 00:00:00 , DOI:10.1039/C5CP01624J
Abstract

Mn2+ localization in hairpin 92 of the 23S ribosomal RNA (HP92) was obtained using W-band (95 GHz) DEER (double electron–electron resonance) distance measurements between the Mn2+ ion and nitroxide spin labels on the RNA. It was found to be preferably situated in the minor groove of the double strand region close to the HP92 loop.

Graphical abstract: Distance measurements between manganese(ii) and nitroxide spin-labels by DEER determine a binding site of Mn2+ in the HP92 loop of ribosomal RNA
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