The lack of scalable-methods for the growth of 2D MoS₂ crystals, an identified emerging material with applications ranging from electronics to energy storage, is a current bottleneck against its large-scale deployment. We report here a two-step ALD route with new organometallic precursors, Mo(NMe₂)₄ and 1,2-ethanedithiol (HS(CH₂)₂SH) which consists in the layer-by-layer deposition of an amorphous surface Mo(IV) thiolate at 50 °C, followed by a subsequent annealing at higher temperature leading to ultra-thin MoS₂ nanocrystals (∼20 nm-large) in the 1–2 monolayer range. In contrast to the usual high-temperature growth of 2D dichalcogenides, where nucleation is the key parameter to control both thickness and uniformity, our novel two-step ALD approach enables chemical control over these two parameters, the growth of 2D MoS₂ crystals upon annealing being ensured by spatial confinement and facilitated by the formation of a buffer oxysulfide interlayer.