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2-(4-Tolylsulfonyl)ethoxymethyl (TEM)—a new 2′-OH protecting group for solid-supported RNA synthesis†
Chuanzheng Zhou,Dmytro Honcharenko,Jyoti Chattopadhyaya
Organic & Biomolecular Chemistry Pub Date : 11/28/2006 00:00:00 , DOI:10.1039/B614210A
Abstract

The 2-(4-tolylsulfonyl)ethoxymethyl (TEM) as a new 2′-OH protecting group is reported for solid-supported RNA synthesis using phosphoramidite chemistry. The usefulness of the 2′-O-TEM group is exemplified by the synthesis of 12 different oligo-RNAs of various sizes (14–38 nucleotides long). The stepwise coupling yield varied from 97–99% with an optimized coupling time of 120 s. The synthesis of all four pure phosphoramidite building blocks is also described. Two new reliable parameters, δC2′δC3′ and δH2′δH3′, have been suggested for the characterization of isomeric 2′-O-TEM and 3′-O-TEM as well as other isomeric mono 2′/3′-protected ribonucleoside derivatives. The most striking feature of this strategy is that the crude RNA prepared using our 2′-O-TEM strategy is sufficiently pure (>90%) for molecular biology research without any additional purification step, thereby making oligo-RNAs easily available at a relatively low cost, saving both time and lab resources.

Graphical abstract: 2-(4-Tolylsulfonyl)ethoxymethyl (TEM)—a new 2′-OH protecting group for solid-supported RNA synthesis
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