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Kinetic barriers and ordering of non-covalently bound states
Simon W. O'Brien,Hideyuki Shiozawa,Rosa Zerella,Dominic P. O'Brien,Dudley H. Williams
Organic & Biomolecular Chemistry Pub Date : 01/07/2003 00:00:00 , DOI:10.1039/B209162N
Abstract

Binding of a dimer of a glycopeptide antibiotic to two molecules of a ligand that are bound to a membrane surface (by a hydrocarbon anchor) has been investigated. This binding on a surface is cooperatively enhanced (surface enhancement) relative to the binding in solution, because the former occurs intramolecularly on a template. Previously a correlation between surface enhancement and thermodynamic stability of the dimer in free solution (Kdimsol) was hypothesised. However, we found that two weakly dimerising antibiotics (vancomycin and ristocetin A) with similar Kdimsol give very different surface enhancements. We propose a model to explain the data correlating surface enhancement to the kinetic barrier to dissociation of the dimer. The surface enhancement of binding can be expected to increase with increasing tightness of the non-covalent interactions formed at the dimer interface. The effect should be found in general where cooperativity is exercised within an organised template (e.g., DNA duplexes and proteins).

Graphical abstract: Kinetic barriers and ordering of non-covalently bound states
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