A simple, efficient, and environmentally friendly synthesis method for bioproducts based on indole-3-butyric acid and amino acids, glycine betaine or choline has been developed. Spectral analysis and molecular calculations were used to determine whether the products were ammonium salts or binary mixtures. Moreover, it was observed that the ammonium salts degraded more rapidly than the binary mixtures when exposed to light. The structures of the products significantly impacted their thermal stability and phase transitions. Biological studies clearly showed that the synthesized products were more effective than a reference commercial preparation as a rooting agent and have significant potential as new biologically active agents with low environmental impact.