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Non-covalent interactions reveal the protein chain δ conformation in a flexible single-residue model†
Zeynab Imani,Venkateswara Rao Mundlapati,Valérie Brenner,Eric Gloaguen,Katia Le Barbu-Debus,Anne Zehnacker-Rentien,David J. Aitken,Michel Mons
Chemical Communications Pub Date : 01/04/2023 00:00:00 , DOI:10.1039/D2CC06658K
Abstract

The δ conformation is a local secondary structure in proteins that implicates a πamide N–H⋯N interaction between a backbone N atom and the NH of the following residue. Small-molecule models thereof have been limited so far to rigid proline-type compounds. We show here that in derivatives of a cyclic amino acid with a sulphur atom in the γ-position, specific side-chain/backbone N–H⋯S interactions stabilize the δ conformation sufficiently to allow it to compete with classical C5 and C7 H-bonded conformers.

Graphical abstract: Non-covalent interactions reveal the protein chain δ conformation in a flexible single-residue model
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