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Nonribosomal peptides protect Pseudomonas nunensis 4A2e from amoebal and nematodal predation†
Sebastian Pflanze,Ruchira Mukherji,Anan Ibrahim,Markus Günther,Sebastian Götze,Somak Chowdhury,Lisa Reimer,Lars Regestein
Chemical Science Pub Date : 10/02/2023 00:00:00 , DOI:10.1039/D3SC03335J
Abstract

The rhizosphere is a highly competitive environment forcing bacteria to evolve strategies to oppose their enemies. The production of toxic secondary metabolites allows bacteria to counteract predators. In this study, we describe the anti-predator armamentarium of the soil-derived bacterium Pseudomonas nunensis 4A2e. Based on a genome mining approach, we identified several biosynthetic gene clusters coding for nonribosomal peptide synthetases. Generation of gene deletion mutants of the respective clusters shows a loss of defense capabilities. We isolated the novel lipopeptides keanumycin D and nunapeptins B and C, and fully elucidated their structures by a combination of in-depth mass spectrometry experiments, stable isotope labelling, and chemical synthesis. Additionally, investigation of the quorum sensing-dependent biosynthesis allowed us to elucidate parts of the underlying regulation of the biosynthetic machinery. Ecology-inspired bioassays highlight the role of these peptides as a defence strategy against protozoans and led us to find a previously unknown function against the bacterivorous nematode Oscheius myriophilus.

Graphical abstract: Nonribosomal peptides protect Pseudomonas nunensis 4A2e from amoebal and nematodal predation
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