CG base pair recognition within DNA triple helices by modified N-methylpyrrolo-dC nucleosides†
Simon R. Gerrard,Mastoura M. Edrees,Imenne Bouamaied,Keith R. Fox,Tom Brown
Organic & Biomolecular Chemistry Pub Date : 09/06/2010 00:00:00 , DOI:10.1039/C0OB00119H
Abstract

3-Aminophenyl-modified analogues of the bicyclic nucleoside N-methyl-3H-pyrrolo[2,3-d]pyrimidin-2(7H)-one were synthesised and incorporated directly into triplex-forming oligonucleotides in order to utilise their extended hydrogen bonding motif for recognition of the CG base pair. All analogues demonstrated strong binding affinity and very good selectivity for CG from pH 6.2 to 7.0; a marked improvement on previous modifications.

Graphical abstract: CG base pair recognition within DNA triple helices by modified N-methylpyrrolo-dC nucleosides