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Correlated disorder and crystal structure of β-VOSO4
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2022-11-09 , DOI: 10.1107/s2052520622010083
ChloeA.Fuller,DianaLuciaQuintero-Castro,AlexeiBosak,VadimDyadkin,DmitryChernyshov
Pauflerite β-VOSO4 has recently been identified as a one-dimensional S = ½ Heisenberg system, of interest both from a fundamental point of view and a potential material for future spintronics applications. The observation of diffuse scattering in a synthetic β-VOSO4 provides a microscopic interpretation of the underlying correlated disorder, which is linked to the inversion of the short–long V—O distance pairs along VO6 chains, forming a local defect state. Direct Monte Carlo modeling indicates that such defects form thin layers with a positive inter-layer correlation, forming small domains with inverted vanadyl bonding patterns. Two-dimensional defects in anisotropic magnetic systems may perturb, or even destroy, long-range magnetic ordering leading to unusual interactions. In particular, the lack of inversion symmetry in the defect layers opens up the possibility for the Dzyaloshinskii–Moriya interaction (DMI) and, consequently, chiral magnetism localized in the defect planes. The defect β-VOSO4 structure, therefore, opens up new possibilities for the study of low-dimensional magnetic systems.
New data on the crystal chemistry of the natural two-layer aluminosilicates latiumite and tuscanite
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-07-04 , DOI: 10.1107/s2052520623004638
NataliaVZubkova,NikitaVChukanov,DmitryAVarlamov,MarinaFVigasina,IgorVPekov,DmitryAKsenofontov,DmitryYuPushcharovsky
The crystal chemistry of the natural microporous two-layer aluminosilicates (2D zeolites) latiumite and tuscanite is re-investigated based on new data on the chemical composition, crystal structures, and infrared and Raman spectra. The CO32−-depleted and P- and H-enriched samples from Sacrofano paleovolcano, Lazio, Italy, are studied. Both minerals are monoclinic; latiumite P21, a = 12.0206 (3), b = 5.09502 (10), c = 10.8527 (3) Å, β = 107.010 (3)°, V = 635.60 (3) Å3 and tuscanite P21/a, a = 23.9846 (9), b = 5.09694 (15), c = 10.8504 (4) Å, β = 107.032 (4)°, V = 1268.26 (8) Å3. The obtained crystal chemical formulae (Z = 2 for both minerals) are [(H3O)0.48(H2O)0.24K0.28](Ca2.48K0.21Na0.21Sr0.06Mg0.04)(Si2.86Al2.14O11)[(SO4)0.70(PO4)0.20](CO3)0.10 for latiumite and [(H3O)0.96(H2O)0.58K0.46](Ca4.94K0.44Na0.45Sr0.09Mg0.08)(Si5.80Al4.20O22)[(SO4)1.53(PO4)0.33](CO3)0.14 for tuscanite. These minerals are dimorphous. Both latiumite and tuscanite show distinct affinity for the PO43− anion. Hydrolytic alteration of these minerals results in partial leaching of potassium accompanied by protonation and hydration which is an important precondition for the existence of ion/proton conductivity of related materials.
A fresh view on the structure and twinning of owyheeite, a rod-polytype and twofold superstructure
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-06-24 , DOI: 10.1107/s2052520623004523
BertholdStöger,ChristianGöb,DanTopa
Arsenic(III) oxide intercalate with ammonium chloride: crystal structure revision and thermal characterization
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-04-18 , DOI: 10.1107/s2052520623003086
WeronikaWrześniewska,PiotrPaluch,PiotrAGuńka
According to the crystal structure determination by Edstrand & Blomqvist [Ark. Kemi (1955), 8, 245–256], intercalate NH4Cl·As2O3·0.5H2O () is not isostructural with compound KCl·As2O3·0.5H2O. This is very unlikely because both NH4Br·2As2O3 and KBr·2As2O3 as well as NH4I·2As2O3 and KI·2As2O3 are isostructural. Hence, intercalate has been studied using single-crystal X-ray diffraction in addition to attenuated total reflection Fourier transform infrared (ATR-FTIR) and 15N solid-state magic-angle spinning nuclear magnetic resonance (ssNMR) spectroscopies. These techniques indicate that revising the previous crystal structure model is necessary. Compound crystallizes in space group P6/mmm with unit-cell parameters a = 5.25420 (10) Å and c = 12.6308 (3) Å and is isostructural with KCl·As2O3·0.5H2O. The presence of two symmetry-independent ammonium cations in the structure has been unequivocally confirmed using 15N ssNMR spectroscopy. The 15N ssNMR spectrum of intercalate has been compared with analogous spectra of NH4Br·2As2O3 and NH4I·2As2O3 which allowed for a probable assignment of signals to ammonium cations occupying particular sites in the crystal structures. Thermogravimetry, differential scanning calorimetry and variable-temperature ATR-FTIR spectra have revealed that intercalate is dehydrated between 320 and 475 K. Upon cooling or standing in moist air water is re-absorbed. Dehydration leads to significant shortening of the c unit-cell parameter as revealed by powder X-ray diffraction [c = 12.1552 (7) Å at 293 K]. Compound decomposes on prolonged heating above 490 K to arsenic(III) oxide and ammonium chloride.
Mapping structural correlations in real space
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-03-28 , DOI: 10.1107/s2052520623002688
RayOsborn
An analysis of neutron and x-ray diffuse scattering from yttria-stabilized zirconia by Schmidt et al. [Acta Cryst. (2023), B79, 137–147] uses three-dimensional pair-distribution functions (3D-ΔPDF) to determine local structural correlations without the need for sophisticated modeling.
Polytypism of Ln(SeO3)(HSeO3)·2H2O compounds: synthesis and crystal structure of the first monoclinic modification of Nd(SeO3)(HSeO3)·2H2O, DFT calculations and order/disorder description
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s2052520622012227
AlisherFMurtazoev,PeterSBerdonosov,SergeyMAksenov,AlexeyNKuznetsov,ValeryADolgikh,YuliaVNelyubina,StefanoMerlino
Compounds with the general formula Ln3+(SeO3)(HSeO3)·2H2O, where Ln = Sm3+, Tb3+, Nd3+ and Lu3+, are characterized by orthorhombic symmetry with space group P212121 and unit-cell parameters in the ranges a ∼ 6.473–6.999, b ∼ 6.845–7.101, c ∼ 16.242–16.426 Å. Light-purple irregularly shaped crystals of a new monoclinic polytype of neodymium selenite Nd(SeO3)(HSeO3)·2H2O have been obtained during a mild-condition hydrothermal synthesis. The monoclinic unit-cell parameters are: a = 7.0815 (2), b = 6.6996 (2), c = 16.7734 (5) Å, β = 101.256 (1)°, V = 780.48 (6) Å3; space group P21/c. The crystal structures of Nd(SeO3)(HSeO3)·2H2O polymorphs show order–disorder (OD) character and can be described using the same OD groupoid family, more precisely a family of OD structures built up from two kinds of non-polar layers (category IV). The first monoclinic maximum degree order (MDO) structure (MDO1-polytype) with space group P21/c can be obtained when the inversion centre is active in the L2n-type layers, while the second MDO structure (MDO2-polytype) is orthorhombic with space group P212121 and can be obtained when the [21--] operation is active in the L2n-type layers. The structural complexity parameters and DFT calculations of both polytypes show that the polytype structures are extremely close energy-wise and almost equally viable from the point of total energy of the structure.
Efficient modulation of a barium metal–organic framework using amino acids
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-02-22 , DOI: 10.1107/s2052520623001105
ManijeSafari,SimaSedghiniya,JanetSoleimannejad,JanJanczak
In recent years, significant advances have been made in the precise control of the physical properties of metal–organic frameworks (MOFs) via the linker-modulated method in which modulators compete with linkers and impose kinetic limitations through crystal growth. In this regard, the structure of a new barium–organic framework [Ba(H2BTC)2(H2O)4]n, BaBTC (BTC = 1,3,5-benzene tricarboxylic acid) is introduced, which allows the competitive coordination strategy and growth orientation of an alkaline-earth metal–organic framework (AEMOF) to be probed without sacrificing phase purity, porosity and crystallinity. The modulator effect of an assortment of amino acids on the particle size and morphology of BaBTC is investigated. Additionally, another new MOF [Ba(BTC)2(H2O)3]n.nH2O, BaBTC-2, is synthesized through a change in the ligand concentration. This work gives a successful example of a modulation method for AEMOF synthesis by amino acids that may contribute towards targeting future avenues of nanomaterial synthesis.
A rod- and tessellation-based comparative analysis of polymorphic and structurally-invariant molecular crystals: application to sulfathiazole and 2-benzyl-5-benzylidenecyclopentanones
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-01-12 , DOI: 10.1107/s205252062201160x
NoelW.Thomas,DavidS.Hughes
A rationalization of the alternative crystal structures adopted by a given molecular compound or by a set of substitutionally related molecular compounds is provided by reference to the five known polymorphs of sulfathiazole and 16 substituted 2-benzyl-5-benzylidene cyclopentanones (BBCPs), respectively. Two-dimensional (2D) packing fractions (ϕ2D) take space-group symmetry into account, with a clear demarcation of closed-packed zones (CPZ) and molecular junction zones (JZ) in all Z′ = 1 structures. Representation of the molecules as two linked rods allows a concise treatment of conformation and rapid visualization of crystal packing. Combined with calculations of intermolecular potential energies, the rod method provides insight into the stabilization mechanisms of alternative polymorphs. In sulfathiazole, the primary factor is to obtain satisfactory hydrogen bonding, with close packing a secondary consideration. In BBCP derivatives, by comparison, close packing is the primary mechanism of stabilization. Whereas the 2D structures arising in CPZ can be analysed as tessellations of molecular-based cells, a method based on 2D Dirichlet cells is required for the JZ. These are calculated from the centroids of the molecular envelopes in high-symmetry planes. It is shown that these centroid coordinates, when combined with space-group symmetry and unit cell coordinates, provide a concise parameterization of all structures containing JZ. It is anticipated that this parameterization may be exploited to predict such crystal structures from powder diffraction data.
The effect of hydrostatic compression on the crystal structure of glycinium phosphite
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2022-09-01 , DOI: 10.1107/s2052520622008289
NikitaE.Bogdanov,DmitryV.Korabel'nikov,IgorA.Fedorov,BorisA.Zakharov,ElenaV.Boldyreva
The crystal structure of glycinium phosphite (GPI) was studied in the pressure range from ambient to 6.5 GPa at 293 K using single-crystal X-ray diffraction. The changes in the unit-cell volume and parameters were continuous and anisotropic. The major compression was observed normal to the direction of the spontaneous polarization that occurs in this structure during a ferroelectric phase transition on cooling, whereas the structural compression along the b axis coinciding with the 21 axis was almost zero. The effect of pressure on the hydrogen bonds linking the H2PO3 tetrahedra into zigzag chains along the c axis was different from that on the hydrogen bonds connecting the glycinium cations with the H2PO3 tetrahedra in the (b × c) plane. The discontinuous changes in the geometries of selected hydrogen bonds at about 1.21 GPa may be evidence of a phase transition, e.g. into an ordered ferroelectric phase (with ordered positions of protons). The anisotropy of compression of GPI in the ferroelectric state (at 0 K) was studied using DFT calculations taking into account dispersive van der Waals interactions. The calculations predicted negative linear compressibility along the b axis.
Pyrite contact twins
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-01-12 , DOI: 10.1107/s2052520622011714
YvesMoëlo,MassimoNespolo,FrançoisFarges
Two examples of contact twins in pyrite from Peru are described. The first one, from Pasto Bueno ore deposit, shows the pyritohedron {120} as principal form, accompanied by the {111} octahedron and {100} cube as secondary forms, giving a lenticular aspect. (111) is the composition plane, and the twin operation is any one of the three binary axes ⟨110⟩ within this plane. The second one (unknown ore deposit) presents two forms, the octahedron {111} and the pyritohedron {120}; the two crystals in the twin are elongated along [101] and [011], respectively, producing a V profile. It is a reflection twin where the twin plane (110) coincides with the composition plane. These twins are by merohedry. Another contact twin is known in the literature, reported by Gaubert [Bull. Soc. Fr. Minéral. Cristallogr. (1928), 51, 211–212] who described it as a spinel twin, i.e. a reflection twin with twin and composition plane (111); here it is shown that it is actually a rotation twin in which the twin operation is a 180° rotation about any of the three equivalent directions ⟨211⟩, contained in the (111) composition plane. The occurrence of these twins as well as the doubtfulness of the spinel twin in pyrite shows a direct relationship with the structural interpretation based on the pseudo-symmetry of the crystallographic orbits.
New refinement strategies for a pseudoatom databank – toward rapid electrostatic interaction energy estimations
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2022-11-03 , DOI: 10.1107/s2052520622008800
SławomirAntoniiBojarowski,BarbaraGruza,DamianTrzybiński,RadosławKamiński,AnnaAgnieszkaHoser,PrashantKumar,KrzysztofWoźniak,PaulinaMariaDominiak
Pseudoatom databanks, collections of parameters from the multipole model of electron densities for various atom types, are used to replace the Independent Atom Model with the more accurate Transferable Aspherical Atom Model (TAAM) in crystal structure refinements. The databanks are also employed to reconstruct the electron density of a molecule, crystal or biomacromolecular complex in a fast yet accurate way and compute various properties such as the energy of electrostatic interactions, for example. A even faster but similarly accurate model for estimations of electrostatic energy exists called aug-PROmol [Bojarowski, Kumar & Dominiak (2016). ChemPhysChem, 17, 2455–2460]. A model analogous to aug-PROmol cannot be built from the current pseudoatom databanks, as they perform badly when truncated to the monopole level. Here, new strategies for multipole model refinements were sought, leading to better parametrization at the monopole level. This would allow the creation of a pseudoatom databank in a single route of model parametrization, which would be suitable for both crystal structure refinement and rapid electrostatic energy calculations. Here it is shown that the cumulative approach to multipole model refinements, as opposed to simultaneous or iterative refinements of all multipole model parameters (Pv, κ, Plm, κ′), leads to substantially different models of electron density. Cumulative refinement of two blocks of parameters, the first with Pv and κ and then the second with Plm and κ′, leads to the Pvκ|Plmκ′ model having promising properties. The Pvκ|Plmκ′ model is as good as the University at Buffalo DataBank (UBDB) in X-ray structure TAAM refinements and electrostatic energy estimations, especially for less polar molecules. When truncated to the monopole level, the Pvκ model has a chance to replace aug-PROmol in fast yet accurate electrostatics energy calculations, although some improvements in κ parametrization for polar functional groups are still needed. The Pvκ model is also a source of point charges which behave similarly to restrained electrostatic potential (RESP) charges in electrostatic interaction energy estimations.
Structural and magnetic properties of Y3(GaAlFe)5O12 liquid-phase epitaxy films with low ferromagnetic resonance losses
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s2052520623000483
YuanjingZhang,QinghuiYang,YingliLiu,AiminHu,DingZhang,HanLi,JingyanYu,JiantaoHuang,YongchengLu,LeiZhang,QiangXue,YileiLi,LichuanJin,QiyeWen,HuaiwuZhang
Ultra-thin rare earth iron garnet (RIG) films with a narrow ferromagnetic resonance (FMR) line width and a low damping factor have attracted a great deal of attention for microwave and spintronic applications. In this work, 200 nm Y3(GaAlFe)5O12 garnet (GaAl-YIG) films were prepared on gadolinium gallium garnet (GGG) substrates by liquid-phase epitaxy (LPE) with low saturation magnetization. The microstructural properties, chemical composition, and magnetostatic and dynamic magnetization characteristics of the films are discussed in detail. According to the structural analysis, these films exhibit a low surface roughness of less than 0.5 nm. The GaAl-YIG films show an obvious temperature dependence of lattice parameter and strain state, and the film's parameter is perfectly matched with that of the GGG substrate at 810°C. There is a clear variation in the Pb level, which brings about a gradual enhancement of the coercivity and a diminution of the squareness ratio of magnetic hysteresis loops as the growth temperature is reduced. Slight changes in surface roughness, strain condition and content of Pb induce the FMR line width and damping factor to vary on a small scale. The line width is less than 10.17 Oe at 12 GHz and the damping factor is of the order of 10−4. All these properties demonstrate that these ultra-thin GaAl-YIG films are of benefit for the development of devices operated at lower frequencies and in lower fields.
(Na,Li)3(Cl,OH)[Cu3OAl(PO4)3]: a first salt-inclusion aluminophosphate oxocuprate with a new type of crystal structure
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-01-12 , DOI: 10.1107/s2052520622011696
OlgaV.Yakubovich,GalinaV.Kiriukhina,SergeyV.Simonov,AnatolyS.Volkov,OlgaV.Dimitrova
The synthesis and characterization of a first salt-inclusion aluminophosphate oxocuprate, (Na,Li)3(Cl,OH)[Cu3OAl(PO4)3], obtained as single crystals, is reported. A novel phase, with a strongly pseudo-orthorhombic structure, is described as a monoclinic crystal structure established by the study of a pseudomerohedric microtwin. It was investigated using scanning electron microscopy, microprobe analysis and low-temperature X-ray diffraction. The composite crystal structure represents an original framework assembled from Cu-centered polyhedra, AlO6 octahedra and PO4 tetrahedra with channels, which incorporate the Na/Li salt component [(Na,Li)3(Cl,OH)]2+ that ensures electroneutrality of the compound. Layers of strongly corrugated chains of Cu-centered octahedra with shared edges and linked by PO4 tetrahedra are shown to be topologically identical with the layers also built from Cu-centered polyhedra and AsO4/VO4 tetrahedra forming the crystal structure of a fumarolic mineral aleutite, (M0.5Cl)[Cu5O2(AsO4)(VO4)] [Siidra et al. (2019). MinMag, 83, 847–853]. `Sawtooth chains' and pairs of Cu-centered octahedra inherent in the title structure may be of interest in solid-state physics, engaging studies in the field of low-dimensional and frustrated magnetism.
Evolution of microstructure and crystallographic texture throughout the rolling process of AA3104
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2022-08-18 , DOI: 10.1107/s2052520622007326
SofiaPapadopoulou,FotiosTsiolis,EvangelosGavalas,SpyrosPapaefthymiou
The metallic components are manufactured through several thermomechanical processes. Each selected procedure has multiple targets. The first target is to obtain the required dimensional criteria and second, to achieve the ideal mechanical response toward the application. This is currently accomplished through years of knowhow combined with an academic background of materials science and engineering. Since metals are polycrystalline materials, the several rotations of the crystals, the preferred orientation also known as texture, and their interactions, are crucial characteristics that are directly correlated to the final response of the material, and one could apprehend its thermomechanical prehistory as well as predict is behavior. Different atomic arrangements act differently texture-wise therefore in the current review article, the evolution of the microstructure and the crystallographic texture through the thermomechanically rolling process especially of Al alloys for packaging applications is analyzed. The crystallographic texture evolution in 3xxx Al alloys in different processing routes is presented and compared to the anisotropic effects occurring during deep drawing. The earing phenomena in Al alloys are correlated to the produced texture and therefore their understanding is crucial in order to highlight the importance of texture control throughout the thermomechanical process.
Proton tautomerism in 5-dimethylaminomethylidene-4-(o-,m-,p-hydroxyphenyl)amino-1,3-thiazol-2(5H)-ones: synthesis, crystal structure and spectroscopic studies
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-05-16 , DOI: 10.1107/s2052520623003852
AndriiPyrih,AndrzejŁapiński,SylwiaZięba,AdamMizera,RomanLesyk,MariuszJaskolski,AndrzejKGzella
Three new 5-dimethylaminomethylidene-4-phenylamino-1,3-thiazol-2(5H)-ones with an hydroxyl group in the ortho, meta and para positions on the phenyl ring were synthesized in order to deduce the structural changes occurring on prototropic tautomerism of the amidine system. The existence of all the title compounds solely in the amino tautomeric form has been established in the solid and liquid (dimethyl sulfoxide solution) phases. The title compounds are analyzed from the point of view of the electronic effects and conformational freedom of their molecules. The intermolecular interactions in the crystals and their supramolecular architecture are highlighted.
Lattice defects in quinacridone
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2022-09-09 , DOI: 10.1107/s205252062200779x
Brey,D.,Scherer,B.,Schmidt,M.U.
Synthesis and structure of two novel trans-platinum complexes
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-05-06 , DOI: 10.1107/s205252062300327x
DorianaVinci,DanielChateigner
Exploring the thermal behaviour of the solvated structures of nifedipine
Acta Crystallographica Section B ( IF 0 ) Pub Date : 2023-03-09 , DOI: 10.1107/s2052520623001282
EleanorCLJones,KateEGoldsmith,MartinRWard,LuisMBimbo,IainDHOswald
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