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期刊名称:Acta Crystallographica Section C
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Single-crystal structure refinements and Debye temperatures of Ir2S3 kashinite and Rh2S3 bowieite
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-07 , DOI: 10.1107/s2053229622009603
AkiraYoshiasa,GingaKitahara,MakotoTokuda,SatokoIshimaru,ShinIchiroOno,KunihisaTerai,AkihikoNakatsuka,KazumasaSugiyama
Single crystals of Ir2S3 (diiridium trisulfide) and Rh2S3 (dirhodium trisulfide) were grown in evacuated silica-glass tubes using a chemical transport method and their crystal structures were determined by single-crystal X-ray diffraction analysis. These compounds have a unique sesquisulfide structure in which pairs of face-sharing octahedra are linked into a three-dimensional structure by further edge- and vertex-sharing. Ir2S3 and Rh2S3 had similar unit-cell parameters and bond distances. The atomic displacement parameter (MSD: mean-square displacement) of each atom in Ir2S3 was considerably smaller than that in Rh2S3. The Debye temperatures (ΘD) estimated from the observed MSDs for the Ir, S1 and S2 sites in Ir2S3 were 259, 576 and 546 K, respectively, and those for Rh, S1 and S2 in Rh2S3 were 337, 533 and 530 K, respectively. The bulk Debye temperature for Ir2S3 kashinite (576 K) was found to rank among the higher values reported for many known sulfides. The bulk Debye temperature for Rh2S3 bowieite (533 K) was lower than that for Ir2S3 kashinite, which crystallizes in the early sequences of mineral crystallization differentiation from the primitive magma in the Earth's mantle.
New cocrystals of heterocyclic drugs: structural, antileishmanial, larvicidal and urease inhibition studies
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-05-04 , DOI: 10.1107/s2053229623003753
GhulamMurtaza,MajidKhan,SabaFarooq,MIqbalChoudhary,SammerYousuf
Many heterocycles have been developed as drugs due to their capacity to interact productively with biological systems. The present study aimed to synthesize cocrystals of the heterocyclic antitubercular agent pyrazinamide (PYZ, 1, BCS III) and the commercially available anticonvulsant drug carbamazepine (CBZ, 2, BCS class II) to study the effect of cocrystallization on the stability and biological activities of these drugs. Two new cocrystals, namely, pyrazinamide–homophthalic acid (1/1) (PYZ:HMA, 3) and carbamazepine–5-chlorosalicylic acid (1/1) (CBZ:5-SA, 4), were synthesized. The single-crystal X-ray diffraction-based structure of carbamazepine–trans-cinnamic acid (1/1) (CBZ:TCA, 5) was also studied for the first time, along with the known cocrystal carbamazepine–nicotinamide (1/1) (CBZ:NA, 6). From a combination drug perspective, these are interesting pharmaceutical cocrystals to overcome the known side effects of PYZ (1) therapy, and the poor biopharmaceutical properties of CBZ (2). The purity and homogeneity of all the synthesized cocrystals were confirmed by single-crystal X-ray diffraction, powder X-ray diffraction and FT–IR analysis, followed by thermal stability studies based on differential scanning calorimetry (DSC) and thermogravimetric analysis (TGA). Detailed intermolecular interactions and the role of hydrogen bonding towards crystal stability were evaluated quantitatively via Hirshfeld surface analysis. The solubility of CBZ at pH 6.8 and 7.4 in 0.1 N HCl and H2O were compared with the values of cocrystal CBZ:5-SA (4). The solubility of CBZ:5-SA was found to be significantly improved at pH 6.8 and 7.4 in H2O. All the synthesized cocrystals 3–6 exhibited a potent urease inhibition (IC50 values range from 17.32 ± 0.89 to 12.3 ± 0.8 µM), several times more potent than standard acetohydroxamic acid (IC50 = 20.34 ± 0.43 µM). PYZ:HMA (3) also exhibited potent larvicidal activity against Aedes aegypti. Among the synthesized cocrystals, PYZ:HMA (3) and CBZ:TCA (5) were found to possess antileishmanial activity against the miltefosine-induced resistant strain of Leishmania major, with IC50 values of 111.98 ± 0.99 and 111.90 ± 1.44 µM, respectively, in comparison with miltefosine (IC50 = 169.55 ± 0.20 µM).
FeIII in the high-spin state in di­methyl­ammonium bis­[3-eth­oxy­salicyl­aldehyde thio­semi­car­ba­zon­ato(2–)-κ3O2,N1,S]ferrate(III)
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-01-01 , DOI: 10.1107/s2053229622011597
RobynEPowell,MartinRLees,GrahamJTizzard,SimonJColes,QingchunYuan,PetraJvanKoningsbruggen
Synthesis, crystal structure and biological properties of a fluorophore-labelled mixed-ligand copper(II) complex incorporating N-hydroxynaphthalene-1,8-dicarboximide
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-11-28 , DOI: 10.1107/s2053229622011147
SatishShantaramBhat,VitthalAKawade,VidyanandKRevankar,VijayKumbar,KishoreBhat
The mixed-ligand fluorophore-labelled copper(II) complex aqua[2,4-dioxo-3-azatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaen-3-olato-κ2O2,O3](1,10-phenanthroline-κ2N,N′)copper(II) nitrate, [Cu(C12H6NO3)(C12H8N2)(H2O)]NO3·CH3OH or [Cu(L)(phen)(H2O)]NO3·CH3OH (where phen is 1,10-phenanthroline and HL is N-hydroxynaphthalene-1,8-dicarboximide), (1), was synthesized and structurally characterized. The structure of (1) was confirmed by single-crystal X-ray structure determination. The complex crystallized in the triclinic space group P. The geometry around the copper centre is distorted square pyramidal, with the apical position occupied by a water molecule. The complex is highly fluorescent in organic and aqueous solutions. It has good anticancer activity, with an IC50 value of 17 µM, which is almost five times greater than cisplatin (IC50 = 82 µM) under identical experimental conditions.
Effects of electron-donating ability of binding sites on coordination number: the interactions of a cyclic Schiff base with copper ions
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-21 , DOI: 10.1107/s2053229623002280
SamanthaARanaweera,BrunoDonnadieu,WilliamPHenry,MarkGWhite
The stepwise addition of Cu2+ ions to the nonplanar cyclic Schiff base 5,9,14,18-tetramethyl-1,4,10,13-tetraazacyclooctadeca-5,8,14,17-tetraene-7,16-dione (H4daaden, C18H28N4O2), yields a one-end-open dinuclear copper chelate. The pyridine adduct of the dinuclear copper chelate, namely, [μ-6,11-dimethyl-7,10-diazahexadeca-5,11-diene-2,4,13,15-tetraolato(4−)](pyridine)dicopper(II), [Cu2(C16H20N2O4)(C5H5N)], was characterized by single-crystal X-ray crystallography. The two CuII atoms of the copper chelate display different coordination modes, i.e. inner-N2O2 and outer-O2O2. The Cu atom which is bonded in the outer-O2O2 mode is axially bonded to a pyridine molecule, which suggests that the electron-donating ability of the O2O2 site to the Cu atom is poor. As a result, the O2O2-bonded Cu atom has a coordination number of five, showing square-bipyramidal geometry around the Cu atom. The N2O2-coordinated site provides sufficient electron density to the other Cu atom to be stabilized with a coordination number of four, showing square-planar geometry around the Cu atom. The electron-donating ability of the ligand coordination sites plays a key role in determining the coordination number of the Cu atoms of the dicopper chelate.
Crystal structures, Hirshfeld analysis, and energy framework analysis of two differently 3′-substituted 4-methylchalcones: 3′-(N=CHC6H4-p-CH3)-4-methylchalcone and 3′-(NHCOCH3)-4-methylchalcone
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-05-04 , DOI: 10.1107/s2053229623003704
ZacharyOBattaglia,JordanTKersten,EliseMNicol,PalomaWhitworth,KraigAWheeler,CharlieLHall,JasonPotticary,VictoriaHamilton,SimonRHall,GemmaDD'Ambruoso,MasaomiMatsumoto,StephenDWarren,MatthewECremeens
Two crystal structures of chalcones, or 1,3-diarylprop-2-en-1-ones, are presented; both contain a p-methyl substitution on the 3-Ring, but differ with respect to the m-substitution on the 1-Ring. Their systematic names are (2E)-3-(4-methylphenyl)-1-(3-{[(4-methylphenyl)methylidene]amino}phenyl)prop-2-en-1-one (C24H21NO) and N-{3-[(2E)-3-(4-methylphenyl)prop-2-enoyl]phenyl}acetamide (C18H17NO2), which are abbreviated as 3′-(N=CHC6H4-p-CH3)-4-methylchalcone and 3′-(NHCOCH3)-4-methylchalcone, respectively. Both chalcones represent the first reported acetamide-substituted and imino-substituted chalcone crystal structures, adding to the robust library of chalcone structures within the Cambridge Structural Database. The crystal structure of 3′-(N=CHC6H4-p-CH3)-4-methylchalcone exhibits close contacts between the enone O atom and the substituent arene ring, in addition to C…C interactions between the substituent arene rings. The structure of 3′-(NHCOCH3)-4-methylchalcone exhibits a unique interaction between the enone O atom and the 1-Ring substituent, contributing to its antiparallel crystal packing. In addition, both structures exhibit π-stacking, which occurs between the 1-Ring and R-Ring for 3′-(N=CHC6H4-p-CH3)-4-methylchalcone, and between the 1-Ring and 3-Ring for 3′-(NHCOCH3)-4-methylchalcone.
Crystal structure and DFT calculations of Cp2NbH(SiIMe2)(SiFMe2): an asymmetric bis(silyl) niobocene hydride complex
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-22 , DOI: 10.1107/s2053229623002395
SaraMRodriguez,YsidroNMotta,MichaelRHill,LauraMOelke,CarlyCCarter,ThomasRCundari,MuhammedYousufuddin
An asymmetric bis(silyl) niobocene hydride complex, namely, bis(η5-cyclopentadienyl)(fluorodimethylsilyl)hydrido(iododimethylsilyl)niobium, [Nb(C5H5)2(C2H6FSi)(C2H6ISi)H] or Cp2NbH(SiIMe2)(SiFMe2), has been studied to determine the effect of the silyl ligand on the position of the hydride attached to the Nb atom. It has been shown that when a Group 17 atom is substituted onto one of the silyl ligands, there is a greater interaction between the hydride and this ligand, as demonstrated by a shorter Si…H distance. In the present work, we have investigated the effect when the silyl ligands are substituted by different Group 17 atoms. We present here the structure and DFT calculations of Cp2NbH(SiIMe2)(SiFMe2), showing that the position of the hydride is located between the two silyl ligands. The results from our investigation show that the hydride is closer to the silyl ligand that is substituted by fluorine.
π-Complexation and C—H hydrogen bonding in the formation of colored cocrystals
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-21 , DOI: 10.1107/s2053229623002231
EricBosch,BryceSMoreno,NathanPBowling
The present study evaluates the potential combination of charge-transfer electron-donor–acceptor π–π complexation and C—H hydrogen bonding to form colored cocrystals. The crystal structures of the red 1:1 cocrystals formed from the isomeric pyridines 4- and 3-{2-[4-(dimethylamino)phenyl]ethynyl}pyridine with 1-[2-(3,5-dinitrophenyl)ethynyl]-2,3,5,6-tetrafluorobenzene, both C14H4F4N2O4·C15H14N2, are reported. Intermolecular interaction energy calculations confirm that π-stacking interactions dominate the intermolecular interactions within each crystal structure. The close contacts revealed by Hirshfeld surface calculations are predominantly C—H interactions with N, O, and F atoms.
Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s2053229623002036
MichaelMAristov,HanGeng,JamesWHarris,JohnFBerry
The heterometallic one-dimensional solvated coordination polymer [NiPt2Cl6(TRIP-Py)4]n
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-09 , DOI: 10.1107/s2053229623001845
HansGildenast,LukasGruszien,UlliEnglert
Halogen bonds, chalcogen bonds, pnictogen bonds, tetrel bonds and other σ-hole inter­actions: a snapshot of current progress
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-05-22 , DOI: 10.1107/s2053229623004072
LeeBrammer,AnssiPeuronen,ThomasMRoseveare
Boron–π interactions in two 3-(dihydroxyboryl)anilinium salts analyzed by crystallographic studies and supported by the noncovalent interactions (NCI) index theoretical approach
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-06-19 , DOI: 10.1107/s2053229623005065
JacoboRivera-Segura,VictorBarba,IranFHernandez-Ahuactzi,HugoTlahuext
In the title compounds, 3-(dihydroxyboryl)anilinium bisulfate monohydrate, C6H9BNO2+·HSO4−·H2O (I), and 3-(dihydroxyboryl)anilinium methyl sulfate, C6H9BNO2+·CH3SO4− (II), the almost planar boronic acid molecules are linked by pairs of O—H…O hydrogen bonds, forming centrosymmetric motifs that can be described by the graph-set R22(8) motif. In both crystals, the B(OH)2 group acquires a syn–anti conformation (with respect to the H atoms). The presence of the hydrogen-bonding functional groups B(OH)2, NH3+, HSO4−, CH3SO4− and H2O generates three-dimensional hydrogen-bonded networks, in which the bisulfate (HSO4−) and methyl sulfate (CH3SO4−) counter-ions act as the central building blocks within the crystal structures. Furthermore, in both structures, the packing is stabilized by weak boron–π interactions, as shown by noncovalent interactions (NCI) index calculations.
Pyridine-4-thiol as halo­gen-bond (HaB) acceptor: influence of the noncovalent inter­action in its reactivity
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-03-15 , DOI: 10.1107/s205322962300205x
MartaEGMosquera,SilviaDortez,FranciscoFernández-Palacio,PilarGómez-Sal
Dibromomethyl- and bromomethyl- or bromo-substituted benzenes and naphthalenes: C—Br…Br interactions
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-02-15 , DOI: 10.1107/s2053229623000906
PiotrKuś,PeterGJones,JoachimKusz,MariaKsiążek
The structures of six benzene and three naphthalene derivatives involving bromo, bromomethyl and dibromomethyl substituents, namely, 1,3-dibromo-5-(dibromomethyl)benzene, C7H4Br4, 1,4-dibromo-2,5-bis(bromomethyl)benzene, C8H4Br6, 1,4-dibromo-2-(dibromomethyl)benzene, C7H4Br4, 1,2-bis(dibromomethyl)benzene, C8H6Br4, 1-(bromomethyl)-2-(dibromomethyl)benzene, C8H7Br3, 2-(bromomethyl)-3-(dibromomethyl)naphthalene, C12H9Br3, 2,3-bis(dibromomethyl)naphthalene, C12H8Br4, 1-(bromomethyl)-2-(dibromomethyl)naphthalene, C12H9Br3, and 1,3-bis(dibromomethyl)benzene, C8H6Br4, are presented. The packing patterns of these compounds are dominated by Br…Br contacts and C—H…Br hydrogen bonds. The Br…Br contacts, shorter than twice the van der Waals radius of bromine (3.7 Å), seem to play a crucial role in the crystal packing of all these compounds. The occurrence of Type I and Type II interactions is also discussed briefly, considering the effective atomic radius of bromine, as is their impact on the packing of molecules in the individual structures.
Low-dimensional compounds containing bioactive ligands. XXII. First crystal structure, cytotoxic activity and DNA and HSA binding of a zirconium(IV) complex with 8-hydroxyquinoline-2-carboxylic acid
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-07-19 , DOI: 10.1107/s2053229623005971
MichaelaHarmošová,MáriaVilková,MartinKello,LukášSmolko,ErikaSamol'ová,DominikaŠebová,IvanPotočňák
A new zirconium(IV) complex, diaquabis(8-hydroxyquinoline-2-carboxylato-κ3N,O2,O8)zirconium(IV) dimethylformamide disolvate, [Zr(C10H5NO3)2(H2O)2]·2C3H7NO or [Zr(QCa)2(H2O)2]·2DMF (1) (HQCaH is 8-hydroxyquinoline-2-carboxylic acid and DMF is dimethylformamide), was prepared and characterized by elemental analysis, IR spectroscopy and single-crystal X-ray structure analysis. Complex 1 is a mononuclear complex in which the ZrIV atoms sit on the twofold axis and they are octacoordinated by two N and six O atoms of two tridentate anionic QCa2− ligands, and two aqua ligands. Outside the coordination sphere are two DMF molecules bound to the complex unit by hydrogen bonds. The structure and stability of complex 1 in dimethyl sulfoxide were verified by NMR spectroscopy. The cytotoxic properties of 1 and HQCaH were studied in vitro against eight cancer cell lines, and their selectivity was tested on the BJ-5ta noncancerous cell line. Both the complex and HQCaH exhibited low activity, with IC50 > 200 µM. DNA and human serum albumin (HSA) binding studies showed that 1 binds to calf thymus (CT) DNA via intercalation and is able to bind to the tryptophan binding site of HSA (Trp-214).
CdII-based compound as a multi-responsive fluorescent probe for sensing FeIII cations and CrVI oxyanions
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2022-10-07 , DOI: 10.1107/s2053229622009445
YanYanAn,LiJunSu,XinZhao,JuanZhiYan
A new luminescent CdII compound, poly[[μ2-1,4-bis(1H-imidazol-1-yl)benzene]{μ2-5-[(3-carboxylphenoxy)methyl]isophthalato}cadmium(II)], [Cd(C16H10O7)(C12H10N4)]n or [Cd(HL)(1,4-bib)]n {H3L is 5-[(3-carboxyphenoxy)methyl]isophthalic acid and 1,4-bib is 1,4-bis(1H-imidazol-1-yl)benzene}, I, has been synthesized successfully from CdII and a semirigid tricarboxylic ligand under hydrothermal conditions. Structure analysis shows that I is a two-dimensional structure with the point symbol {44.62}. The three-dimensional framework is constructed by O—H…O hydrogen bonds and π–π stacking interactions. Furthermore, the obtained CdII compound displays high solvent stability and excellent thermal stability, as shown by powder X-ray diffraction and thermogravimetry measurements. Studies of the luminescence properties reveal that compound I can act as a promising luminescent sensor for detecting FeIII cations and CrVI oxyanions with high selectivity and low detection limits (0.19 µM for Fe3+ and 1.13 µM for Cr2O72−), and is additionally free from the interference of other ions. The mechanism of selective quenching was studied by measuring the UV–Vis absorption of the host compound and the target analytes.
Proton-transfer salts of diphenylphosphinic acid with substituted 2-aminopyridine: crystal structure, spectroscopic and DFT studies
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-04-24 , DOI: 10.1107/s2053229623003388
HaokunYuan,RanZhang,KaiHu,RuiqinFang
Three proton-transfer salts of diphenylphosphinic acid (DPPA) with 2-amino-5-(X)-pyridine (AMPY, X = Cl, CN or CH3), namely, 2-amino-5-chloropyridinium diphenylphosphinate, C5H6ClN2+·C12H10O2P− (1, X = Cl), 2-amino-5-cyanopyridinium diphenylphosphinate, C6H6N3+·C12H10O2P− (2, X = CN), and 2-amino-5-methylpyridinium diphenylphosphinate, C6H9N2+·C12H10O2P− (3, X = CH3), have been synthesized and characterized by FT–IR and 1H NMR spectroscopy, and X-ray crystallography. The crystal structures of compounds 1–3 were determined in the space group P for 1 and 2, and C2/c for 3. All three compounds contain N—H…O hydrogen-bonding interactions due to proton transfer from the O=P—OH group of DPPA as donor to the pyridine N atom of AMPY as acceptor. The proton transfer of compounds 1–3 was also verified by 1H NMR and FT–IR spectroscopy. The stoichiometry of all three proton-transfer salts was determined to be 1:1 and the Benesi–Hildebrand equation was applied to determine the formation constant (KCT) and the molar extinction coefficient (ϵCT) in each case. Theoretical density functional theory (DFT) calculations were performed to investigate the optimized geometries, the molecular electrostatic potentials (MEP) and the highest occupied molecular orbitals (HOMO) and lowest unoccupied molecular orbitals (LUMO) of all three proton-transfer salts. The results showed good agreement between the experimental data and the DFT computational analysis.
Synthesis and crystal structures of two 1H-benzo[d]imidazole derivatives: DFT and anticorrosion studies, and Hirshfeld surface analysis
Acta Crystallographica Section C ( IF 0 ) Pub Date : 2023-06-29 , DOI: 10.1107/s2053229623005545
NadirGhichi,AmelDjedouani,DouniazedHannachid,MohamedElhadiSaid,AliBenboudiaf,HocineMerazig,LouizaOuksel,AbdelkaderHellal,HelenStoeckli-Evans
The title benzimidazole compounds, namely, 2-(4-methoxynaphthalen-1-yl)-1H-benzo[d]imidazole, C18H14N2O (I) and 2-(4-methoxynaphthalen-1-yl)-1-[(4-methoxynaphthalen-1-yl)methyl]-1H-benzo[d]imidazole ethanol monosolvate, C30H24N2O2·C2H6O (II), were synthesized by the condensation reaction of benzene-1,2-diamine with 4-methoxynaphthalene-1-carbaldehyde in the ratios 1:1 and 1:2, respectively. In I, the mean plane of the naphthalene ring system is inclined to that of the benzimidazole ring by 39.22 (8)°, while in II, the corresponding dihedral angle is 64.76 (6)°. This difference is probably influenced by the position of the second naphthalene ring system in II; it is inclined to the benzimidazole ring mean plane by 77.68 (6)°. The two naphthalene ring systems in II are inclined to one another by 75.58 (6)°. In the crystal of I, molecules are linked by N—H…N hydrogen bonds to form chains propagating along the a-axis direction. Inversion-related molecules are also linked by a C—H…π interaction linking the chains to form layers lying parallel to the ac plane. In the crystal of II, the disordered ethanol molecule is linked to the molecule of II by an O—H…N hydrogen bond. There are a number of C—H…π interactions present, both intra- and intermolecular. Molecules related by an inversion centre are linked by C—H…π interactions, forming a dimer. The dimers are linked by further C—H…π interactions, forming ribbons propagating along the b-axis direction. The interatomic contacts in the crystal structures of both compounds were explored using Hirshfeld surface analysis. The molecular structures of I and II were determined by density functional theory (DFT) calculations at the M062X/6-311+g(d) level of theory and compared with the experimentally determined molecular structures in the solid state. Local and global reactivity descriptors were computed to predict the reactivity of the title compounds. Both compounds were shown to exhibit significant anticorrosion properties with respect to iron and copper.
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