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期刊名称:Annual Review of Chemical and Biomolecular Engineering
期刊ISSN:1947-5438
期刊官方网站:http://www.annualreviews.org/journal/chembioeng
出版商:Annual Reviews Inc.
出版周期:
影响因子:9.7
始发年份:2010
年文章数:17
是否OA:否
Optogenetics Illuminates Applications in Microbial Engineering
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-03-23 , DOI: 10.1146/annurev-chembioeng-092120-092340
ShannonMHoffman,AllisonYTang,JoséLAvalos
Optogenetics has been used in a variety of microbial engineering applications, such as chemical and protein production, studies of cell physiology, and engineered microbe–host interactions. These diverse applications benefit from the precise spatiotemporal control that light affords, as well as its tunability, reversibility, and orthogonality. This combination of unique capabilities has enabled a surge of studies in recent years investigating complex biological systems with completely new approaches. We briefly describe the optogenetic tools that have been developed for microbial engineering, emphasizing the scientific advancements that they have enabled. In particular, we focus on the unique benefits and applications of implementing optogenetic control, from bacterial therapeutics to cybergenetics. Finally, we discuss future research directions, with special attention given to the development of orthogonal multichromatic controls. With an abundance of advantages offered by optogenetics, the future is bright in microbial engineering.
Phagosome–Bacteria Interactions from the Bottom Up
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-090920-015024
DarshanMSivaloganathan,MarkPBrynildsen
When attempting to propagate infections, bacterial pathogens encounter phagocytes that encase them in vacuoles called phagosomes. Within phagosomes, bacteria are bombarded with a plethora of stresses that often lead to their demise. However, pathogens have evolved numerous strategies to counter those host defenses and facilitate survival. Given the importance of phagosome–bacteria interactions to infection outcomes, they represent a collection of targets that are of interest for next-generation antibacterials. To facilitate such therapies, different approaches can be employed to increase understanding of phagosome–bacteria interactions, and these can be classified broadly as top down (starting from intact systems and breaking down the importance of different parts) or bottom up (developing a knowledge base on simplified systems and progressively increasing complexity). Here we review knowledge of phagosomal compositions and bacterial survival tactics useful for bottom-up approaches, which are particularly relevant for the application of reaction engineering to quantify and predict the time evolution of biochemical species in these death-dealing vacuoles. Further, we highlight how understanding in this area can be built up through the combination of immunology, microbiology, and engineering.
Lessons from Biomass Valorization for Improving Plastic-Recycling Enzymes
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-04-04 , DOI: 10.1146/annurev-chembioeng-092120-091054
MargaridaGomes,YannickRondelez,LudwikLeibler
Synthetic polymers such as plastics exhibit numerous advantageous properties that have made them essential components of our daily lives, with plastic production doubling every 15 years. The relatively low cost of petroleum-based polymers encourages their single use and overconsumption. Synthetic plastics are recalcitrant to biodegradation, and mismanagement of plastic waste leads to their accumulation in the ecosystem, resulting in a disastrous environmental footprint. Enzymes capable of depolymerizing plastics have been reported recently that may provide a starting point for eco-friendly plastic recycling routes. However, some questions remain about the mechanisms by which enzymes can digest insoluble solid substrates. We review the characterization and engineering of plastic-eating enzymes and provide some comparisons with the field of lignocellulosic biomass valorization.
Multilevel Mesoscale Complexities in Mesoregimes: Challenges in Chemical and Biochemical Engineering
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-04-04 , DOI: 10.1146/annurev-chembioeng-092220-115031
JianhuaChen,YingRen,WenLaiHuang,LinZhang,JinghaiLi
This review discusses the complex behaviors in diverse chemical and biochemical systems to elucidate their commonalities and thus help develop a mesoscience methodology to address the complexities in even broader topics. This could possibly build a new scientific paradigm for different disciplines and could meanwhile provide effective tools to tackle the big challenges in various fields, thus paving a path toward combining the paradigm shift in science with the breakthrough in technique developments. Starting with our relatively fruitful understanding of chemical systems, the discussion focuses on the relatively pristine but very intriguing biochemical systems. It is recognized that diverse complexities are multilevel in nature, with each level being multiscale and the complexity emerging always at mesoscales in mesoregimes. Relevant advances in theoretical understandings and mathematical tools are summarized as well based on case studies, and the convergence between physics and mathematics is highlighted.
Blockchain Technology in the Chemical Industry
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-04-01 , DOI: 10.1146/annurev-chembioeng-092120-022935
XiaochiZhou,MarkusKraft
This article presents a review of the application of blockchain and blockchain-based smart contracts in the chemical and related industries. We introduce the basic concepts of blockchain and smart contracts and explain how some of their features are enabled. We review several typical or novel applications of blockchain and smart contract technologies and their enabling concepts and underlying technologies. We classify the selected literature into five categories and discuss their motivations and technical designs. We recognize that the trend of decentralization creates a need to use blockchain and smart contracts to implement trust and distributed control mechanisms. We also speculate on future applications of blockchain and smart contracts. We believe that, in the future, blockchains with different consensus mechanisms will be studied and applied to achieve more efficient and practical decentralized systems. Also, blockchain-based smart contracts will be more widely applied to enhance autonomous distributed controls in decentralized systems.
Nonconjugated Redox-Active Polymers: Electron Transfer Mechanisms, Energy Storage, and Chemical Versatility
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2023-06-08 , DOI: 10.1146/annurev-chembioeng-092220-111121
TingMa,AlexandraDEasley,RatulMitraThakur,KhirabdhiTMohanty,ChenWang,JodieLLutkenhaus
The storage of electric energy in a safe and environmentally friendly way is of ever-growing importance for a modern, technology-based society. With future pressures predicted for batteries that contain strategic metals, there is increasing interest in metal-free electrode materials. Among candidate materials, nonconjugated redox-active polymers (NC-RAPs) have advantages in terms of cost-effectiveness, good processability, unique electrochemical properties, and precise tuning for different battery chemistries. Here, we review the current state of the art regarding the mechanisms of redox kinetics, molecular design, synthesis, and application of NC-RAPs in electrochemical energy storage and conversion. Different redox chemistries are compared, including polyquinones, polyimides, polyketones, sulfur-containing polymers, radical-containing polymers, polyphenylamines, polyphenazines, polyphenothiazines, polyphenoxazines, and polyviologens. We close with cell design principles considering electrolyte optimization and cell configuration. Finally, we point to fundamental and applied areas of future promise for designer NC-RAPs.
Tough Double Network Hydrogel and Its Biomedical Applications
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-101220-080338
TakayukiNonoyama,JianPingGong
Soft and wet hydrogels have many similarities to biological tissues, though their mechanical fragility had been one of the biggest obstacles in biomedical applications. Studies and developments in double network (DN) hydrogels have elucidated how to create tough gels universally based on sacrificial bond principles and opened a path for biomedical application of hydrogels in regenerative medicine and artificial soft connective tissues, such as cartilage, tendon, and ligament, which endure high tension and compression. This review explores a universal toughening mechanism for and biomedical studies of DN hydrogels. Moreover, because the term sacrificial bonds has been mentioned often in studies of bone tissues, consisting of biomacromolecules and biominerals, recent studies of gel–biomineral composites to understand early-stage osteogenesis and to simulate bony sacrificial bonds are also summarized.
Small-Scale Phenomena in Reactive Bubbly Flows: Experiments, Numerical Modeling, and Applications
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: Annual Review of Chemical and Biomolecular Engineering
MichaelSchlüter,SonjaHerres-Pawlis,UlrichNieken,UteTuttlies,DieterBothe
Improving the yield and selectivity of chemical reactions is one of the challenging tasks in paving the way for a more sustainable and climate-friendly economy. For the industrially highly relevant gas–liquid reactions, this can be achieved by tailoring the timescales of mixing to the requirements of the reaction. Although this has long been known for idealized reactors and time- and space-averaged processes, considerable progress has been made recently on the influence of local mixing processes. This progress has become possible through joint research between chemists, mathematicians, and engineers. We present the reaction systems with adjustable kinetics that have been developed, which are easy to handle and analyze. We show examples of how the selectivity of competitive-consecutive reactions can be controlled via local bubble wake structures. This is demonstrated for Taylor bubbles and bubbly flows under technical conditions. Highly resolvednumerical simulations confirm the importance of the bubble wake structure for the performance of a particular chemical reaction and indicate tremendous potential for future process improvements.
Wearable and Implantable Soft Bioelectronics: Device Designs and Material Strategies
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: Annual Review of Chemical and Biomolecular Engineering
Sung-HyukSunwoo,Kyoung-HoHa,SangkyuLee,NanshuLu,Dae-HyeongKim
High-performance wearable and implantable devices capable of recording physiological signals and delivering appropriate therapeutics in real time are playing a pivotal role in revolutionizing personalized healthcare. However, the mechanical and biochemical mismatches between rigid, inorganic devices and soft, organic human tissues cause significant trouble, including skin irritation, tissue damage, compromised signal-to-noise ratios, and limited service time. As a result, profuse research efforts have been devoted to overcoming these issues by using flexible and stretchable device designs and soft materials. Here, we summarize recent representative research and technological advances for soft bioelectronics, including conformable and stretchable device designs, various types of soft electronic materials, and surface coating and treatment methods. We also highlight applications of these strategies to emerging soft wearable and implantable devices. We conclude with some current limitations and offer future prospects of this booming field.
Storage of Carbon Dioxide in Saline Aquifers: Physicochemical Processes, Key Constraints, and Scale-Up Potential
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-093020-091447
PhilipS.Ringrose,Anne-KariFurre,StuartM.V.Gilfillan,SamuelKrevor,MartinLandrø,RoryLeslie,TipMeckel,BamshadNazarian,AdeelZahid
CO2 storage in saline aquifers offers a realistic means of achieving globally significant reductions in greenhouse gas emissions at the scale of billions of tonnes per year. We review insights into the processes involved using well-documented industrial-scale projects, supported by a range of laboratory analyses, field studies, and flow simulations. The main topics we address are (a) the significant physicochemical processes, (b) the factors limiting CO2 storage capacity, and (c) the requirements for global scale-up.Although CO2 capture and storage (CCS) technology can be considered mature and proven, it requires significant and rapid scale-up to meet the objectives of the Paris Climate Agreement. The projected growth in the number of CO2 injection wells required is significantly lower than the historic petroleum industry drill rates, indicating that decarbonization via CCS is a highly credible and affordable ambition for modern human society. Several technology developments are needed to reduce deployment costs and to stimulate widespread adoption of this technology, and these should focus on demonstration of long-term retention and safety of CO2 storage and development of smart ways of handling injection wells and pressure, cost-effective monitoring solutions, and deployment of CCS hubs with associated infrastructure.
Electrochemical Manufacturing Routes for Organic Chemical Commodities
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2023-03-17 , DOI: 10.1146/annurev-chembioeng-101121-090840
RicardoMathison,AlexandraLRamosFigueroa,CaseyBloomquist,MiguelAModestino
Electrochemical synthesis of organic chemical commodities provides an alternative to conventional thermochemical manufacturing and enables the direct use of renewable electricity to reduce greenhouse gas emissions from the chemical industry. We discuss electrochemical synthesis approaches that use abundant carbon feedstocks for the production of the largest petrochemical precursors and basic organic chemical products: light olefins, olefin oxidation derivatives, aromatics, and methanol. First, we identify feasible routes for the electrochemical production of each commodity while considering the reaction thermodynamics, available feedstocks, and competing thermochemical processes. Next, we summarize successful catalysis and reaction engineering approaches to overcome technological challenges that prevent electrochemical routes from operating at high production rates, selectivity, stability, and energy conversion efficiency. Finally, we provide an outlook on the strategies that must be implemented to achieve large-scale electrochemical manufacturing of major organic chemical commodities.
Solid-Binding Proteins: Bridging Synthesis, Assembly, and Function in Hybrid and Hierarchical Materials Fabrication
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-102020-015923
KarthikPushpavanam,JinrongMa,YifengCai,NadaY.Naser,FrançoisBaneyx
There is considerable interest in the development of hybrid organic–inorganic materials because of the potential for harvesting the unique capabilities that each system has to offer. Proteins are an especially attractive organic component owing to the high amount of chemical information encoded in their amino acid sequence, their amenability to molecular and computational (re)design, and the many structures and functions they specify. Genetic installation of solid-binding peptides (SBPs) within protein frameworks affords control over the position and orientation of adhesive and morphogenetic segments, and a path toward predictive synthesis and assembly of functional materials and devices, all while harnessing the built-in properties of the host scaffold. Here, we review the current understanding of the mechanisms through which SBPs bind to technologically relevant interfaces, with an emphasis on the variables that influence the process, and highlight the last decade of progress in the use of solid-binding proteins for hybrid and hierarchical materials synthesis.
Recent Developments in Solvent-Based Fluid Separations
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-102620-015346
BoeloSchuur,ThomasBrouwer,LisetteMJSprakel
The most important developments in solvent-based fluid separations, separations involving at least one fluid phase, are reviewed. After a brief introduction and discussion on general solvent trends observed in all fields of application, several specific fields are discussed. Important solvent trends include replacement of traditional molecular solvents by ionic liquids and deep eutectic solvents and, more recently, increasing discussion around bio-based solvents in some application fields. Furthermore, stimuli-responsive systems are discussed; the most significant developments in this field are seen for CO2-switchable and redox-responsive solvents. Discussed fields of application include hydrocarbons separations, carbon capture, biorefineries, and metals separations. For all but the hydrocarbons separations, newly reported electrochemically mediated separations seem to offer exciting new windows of opportunities.
In Situ/Operando Characterization Techniques of Electrochemical CO2 Reduction
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2023-03-08 , DOI: 10.1146/annurev-chembioeng-101121-071735
BjornHasa,YaranZhao,FengJiao
Electrocatalytic conversion of carbon dioxide to valuable chemicals and fuels driven by renewable energy plays a crucial role in achieving net-zero carbon emissions. Understanding the structure–activity relationship and the reaction mechanism is significant for tuning electrocatalyst selectivity. Therefore, characterizing catalyst dynamic evolution and reaction intermediates under reaction conditions is necessary but still challenging. We first summarize the most recent progress in mechanistic understanding of heterogeneous CO2/CO reduction using in situ/operando techniques, including surface-enhanced vibrational spectroscopies, X-ray- and electron-based techniques, and mass spectroscopy, along with discussing remaining limitations. We then offer insights and perspectives to accelerate the future development of in situ/operando techniques.
Engineering Next-Generation CAR-T Cells: Overcoming Tumor Hypoxia and Metabolism
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-06-21 , DOI: 10.1146/annurev-chembioeng-092120-092914
TorahitoAGao,YvonneYChen
T cells engineered to express chimeric antigen receptors (CARs) have shown remarkable success in treating B-cell malignancies, reflected by multiple US Food and Drug Administration–approved CAR-T cell products currently on the market. However, various obstacles have thus far limited the use of approved products and constrained the efficacy of CAR-T cell therapy against solid tumors. Overcoming these obstacles will necessitate multidimensional CAR-T cell engineering approaches and better understanding of the intricate tumor microenvironment (TME). Key challenges include treatment-related toxicity, antigen escape and heterogeneity, and the highly immunosuppressive profile of the TME. Notably, the hypoxic and nutrient-deprived nature of the TME severely attenuates CAR-T cell fitness and efficacy, highlighting the need for more sophisticated engineering strategies. In this review, we examine recent advances in protein- and cell-engineering strategies to improve CAR-T cell safety and efficacy, with an emphasis on overcoming immunosuppression induced by tumor metabolism and hypoxia.
RNAs as Sensors of Oxidative Stress in Bacteria
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2023-06-08 , DOI: 10.1146/annurev-chembioeng-101121-070250
RyanBuchser,PhillipSweet,AparnaAnantharaman,LydiaContreras
Oxidative stress is an important and pervasive physical stress encountered by all kingdoms of life, including bacteria. In this review, we briefly describe the nature of oxidative stress, highlight well-characterized protein-based sensors (transcription factors) of reactive oxygen species that serve as standards for molecular sensors in oxidative stress, and describe molecular studies that have explored the potential of direct RNA sensitivity to oxidative stress. Finally, we describe the gaps in knowledge of RNA sensors—particularly regarding the chemical modification of RNA nucleobases. RNA sensors are poised to emerge as an essential layer of understanding and regulating dynamic biological pathways in oxidative stress responses in bacteria and, thus, also represent an important frontier of synthetic biology.
Nature-Inspired Chemical Engineering for Process Intensification
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: 10.1146/annurev-chembioeng-060718-030249
Marc-OlivierCoppens
A nature-inspired solution (NIS) methodology is proposed as a systematic platform for innovation and to inform transformative technology required to address Grand Challenges, including sustainable development. Scalability, efficiency, and resilience are essential to nature, as they are to engineering processes. They are achieved through underpinning fundamental mechanisms, which are grouped as recurring themes in the NIS approach: hierarchical transport networks, force balancing, dynamic self-organization, and ecosystem properties. To leverage these universal mechanisms, and incorporate them effectively into engineering design, adaptations may be needed to accommodate the different contexts of nature and engineering applications. Nature-inspired chemical engineering takes advantage of the NIS methodology for process intensification, as demonstrated here in fluidization, catalysis, fuel cell engineering, and membrane separations, where much higher performance is achieved by rigorously employing concepts optimized in nature. The same approach lends itself to other applications, from biomedical engineering to information technology and architecture.
Interferometric Probing of Physical and Chemical Properties of Solutions: Noncontact Investigation of Liquids
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-03-18 , DOI: 10.1146/annurev-chembioeng-092220-123822
CorneliaEder,HeikoBriesen
Interferometry is a highly versatile tool for probing physical and chemical phenomena. In addition to the benefit of noncontact investigations, even spatially resolved information can be obtained by choosing a suitable setup. This review presents the evolution of the various setups that have evolved since the first interferometers were developed in the mid-nineteenth century and highlights the benefits, limitations, and typical areas of application. This review focuses on interferometry based on electromagnetic waves in the near-infrared and visible range applied to liquid samples, categorizes the chemical/physical properties (e.g., pressure, temperature, composition) and phenomena (e.g., evaporation, crystal growth, diffusion, thermophoresis) that can be assessed, and presents a comprehensive literature review of specific existing applications. Finally, it discusses some fundamental open questions with respect to geometric considerations and overlapping effects.
Polymer-Infiltrated Nanoparticle Films Using Capillarity-Based Techniques: Toward Multifunctional Coatings and Membranes
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2021-06-07 , DOI: Annual Review of Chemical and Biomolecular Engineering
R.BharathVenkatesh,NehaManohar,YiweiQiang,HaonanWang,HongHuyTran,BaekminQ.Kim,AnastasiaNeuman,TianRen,ZahraFakhraai,RobertA.Riggleman,KathleenJ.Stebe,KevinTurner,DaeyeonLee
Polymer-infiltrated nanoparticle films (PINFs) are a new class of nanocomposites that offer synergistic properties and functionality derived from unusually high fractions of nanomaterials. Recently, two versatile techniques,capillary rise infiltration (CaRI) and solvent-driven infiltration of polymer (SIP), have been introduced that exploit capillary forces in films of densely packed nanoparticles. In CaRI, a highly loaded PINF is produced by thermally induced wicking of polymer melt into the nanoparticle packing pores. In SIP, exposure of a polymer–nanoparticle bilayer to solvent vapor atmosphere induces capillary condensation of solvent in the pores of nanoparticle packing, leading to infiltration of polymer into the solvent-filled pores. CaRI/SIP PINFs show superior properties compared with polymer nanocomposite films made using traditional methods, including superb mechanical properties, thermal stability, heat transfer, and optical properties. This review discusses fundamental aspects of the infiltration process and highlights potential applications in separations, structural coatings, and polymer upcycling—a process to convert polymer wastes into useful chemicals.
Zeolitic Imidazolate Framework Membranes: Novel Synthesis Methods and Progress Toward Industrial Use
Annual Review of Chemical and Biomolecular Engineering ( IF 9.7 ) Pub Date : 2022-04-13 , DOI: 10.1146/annurev-chembioeng-092320-120148
DennisTLee,PeterCorkery,SunghwanPark,Hae-KwonJeong,MichaelTsapatsis
In the last decade, zeolitic imidazolate frameworks (ZIFs) have been studied extensively for their potential as selective separation membranes. In this review, we highlight unique structural properties of ZIFs that allow them to achieve certain important separations, like that of propylene from propane, and summarize the state of the art in ZIF thin-film deposition on porous substrates and their modification by postsynthesis treatments. We also review the reported membrane performance for representative membrane synthesis approaches and attempt to rank the synthesis methods with respect to potential for scalability. To compare the dependence of membrane performance on membrane synthesis methods and operating conditions, we map out fluxes and separation factors of selected ZIF-8 membranes for propylene/propane separation. Finally, we provide future directions considering the importance of further improvements in scalability, cost effectiveness, and stable performance under industrially relevant conditions.
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