1. Gene
  2. LSM3 - LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated Gene

LSM3 - LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated Gene

中文名称:LSM3 同系物、U6 小核 RNA 和 mRNA 降解相关

种属: Homo sapiens

同用名: SMX4; USS2; YLR438C

基因 ID: 27258 | 基因类型: protein coding

关于 LSM3

Cytogenetic location: 3p25.1 Genomic coordinates (GRCh38): 3:14,178,817-14,201,122 (from NCBI)

This gene has 1 transcript (splice variant) and 205 orthologues. Ubiquitous expression in kidney (RPKM 53.9), fat (RPKM 40.8) and 25 other tissues.

功能概要

基于与 Sm 蛋白家族的序列同源性,在多种生物体中鉴定出 Sm 样蛋白 (参见 SNRPD2;MIM 601061) 。 Sm 样蛋白包含 Sm 序列基序,该基序由 2 个区域组成,该区域由折叠成环的可变长度接头隔开。 Sm 样蛋白被认为形成了存在于 tri-snRNP 颗粒中的稳定异聚体,这对于 pre-mRNA 剪接很重要。[OMIM 提供,2004 年 4 月]

Sm-like proteins were identified in a variety of organisms based on sequence homology with the Sm protein family (see SNRPD2; MIM 601061). Sm-like proteins contain the Sm sequence motif, which consists of 2 regions separated by a linker of variable length that folds as a loop. The Sm-like proteins are thought to form a stable heteromer present in tri-snRNP particles, which are important for pre-mRNA splicing.[supplied by OMIM, Apr 2004]

LSM3 基因产物(1)

mRNA Protein Name
NM_014463.3 NP_055278.1 U6 snRNA-associated Sm-like protein LSm3
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables U6 snRNA 3'-end binding IDA
IDA: 通过直接分析推断
10369684 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
14667819 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
acts upstream of or within mRNA splicing, via spliceosome IDA
IDA: 通过直接分析推断
10369684 GOA
involved in mRNA splicing, via spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of Lsm2-8 complex IDA
IDA: 通过直接分析推断
10523320 GOA
part of U2-type precatalytic spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
part of U4/U6 x U5 tri-snRNP complex IDA
IDA: 通过直接分析推断
10369684 GOA
part of U4/U6 x U5 tri-snRNP complex IPI
IPI: 通过物理相互作用推断
30975767 GOA
part of catalytic step 2 spliceosome IDA
IDA: 通过直接分析推断
11991638 GOA
located in nucleus IDA
IDA: 通过直接分析推断
26912367 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

LSM3 蛋白结构

LSM

LSM: LSM domain (22 - 97)

  • 0
  • 102 a.a.
蛋白主名 其他名称

U6 snRNA-associated Sm-like protein LSm3

LSM3 U6 small nuclear RNA and mRNA degradation associated

LSM3 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
LSM3 P62310 TFIP11 Homo sapiens Q9UBB9 27107012
种属内
LSM3 P62310 TFIP11 Homo sapiens Q9UBB9 33961781
种属内
LSM3 P62310 TEPSIN Homo sapiens Q96N21 32296183
种属内
LSM3 P62310 TEPSIN Homo sapiens Q96N21 32296183
种属内
LSM3 P62310 TEPSIN Homo sapiens Q96N21 32296183
种属内
LSM3 P62310 LSM2 Homo sapiens Q9Y333
Y2H
15231747
种属内
LSM3 P62310 LSM1 Homo sapiens O15116 25416956
种属内
LSM3 P62310 LSM1 Homo sapiens O15116 33961781
种属内
LSM3 P62310 LSM1 Homo sapiens O15116 32296183
种属内
LSM3 P62310 LSM1 Homo sapiens O15116
Y2H
15231747
种属内
LSM3 P62310 LSM1 Homo sapiens O15116 32296183
种属内
LSM3 P62310 LSM8 Homo sapiens O95777
Y2H
15231747
种属内
LSM3 P62310 LSM8 Homo sapiens O95777 21988832
种属内
LSM3 P62310 LSM8 Homo sapiens O95777 33961781
种属内
LSM3 P62310 LSM8 Homo sapiens O95777
Y2H
21988832
种属内
LSM3 P62310 LSM8 Homo sapiens O95777
Y2H
22365833
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45 32296183
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45 33961781
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45 32296183
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45
Y2H
15231747
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45 32296183
种属内
LSM3 P62310 LSM7 Homo sapiens Q9UK45
Y2H
22365833
种属内
LSM3 P62310 YBX1 Homo sapiens P67809
Y2H
22365833
种属内
LSM3 P62310 SNRPF Homo sapiens P62306 32296183
种属内
LSM3 P62310 SNRPF Homo sapiens P62306 32296183
种属内
LSM3 P62310 CEP95 Homo sapiens Q96GE4 33961781
种属内
LSM3 P62310 CEP95 Homo sapiens Q96GE4
Y2H
15231747
种属内
LSM3 P62310 SNRPD3 Homo sapiens P62318 32296183
种属内
LSM3 P62310 SNRPD3 Homo sapiens P62318 32296183
种属内
LSM3 P62310 SNRPD3 Homo sapiens P62318 32296183
种属内
LSM3 P62310 SNRPD3 Homo sapiens P62318
Y2H
15231747
种属内
LSM3 P62310 LSM5 Homo sapiens Q9Y4Y9 32296183
种属内
LSM3 P62310 LSM5 Homo sapiens Q9Y4Y9
Y2H
15231747
种属内
LSM3 P62310 LSM5 Homo sapiens Q9Y4Y9 33961781
种属内
LSM3 P62310 LSM10 Homo sapiens Q969L4 33961781
种属内
LSM3 P62310 LSM10 Homo sapiens Q969L4
Y2H
15231747
种属内
LSM3 P62310 LSM10 Homo sapiens Q969L4 16189514
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 25416956
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 32296183
种属内
LSM3 P62310 LSM6 Homo sapiens P62312
Y2H
15231747
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 32296183
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 33961781
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 32296183
种属内
LSM3 P62310 LSM6 Homo sapiens P62312 25416956
种属内
LSM3 P62310 INCA1 Homo sapiens Q0VD86 32296183
种属内
LSM3 P62310 INCA1 Homo sapiens Q0VD86 32296183
种属内
LSM3 P62310 INCA1 Homo sapiens Q0VD86 32296183
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105 32296183
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105 25416956
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105 32296183
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105 33961781
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105
Y2H
22365833
种属内
LSM3 P62310 CLNS1A Homo sapiens P54105 25416956
种属内
LSM3 P62310 LSM12 Homo sapiens Q3MHD2 32296183
种属内
LSM3 P62310 LSM12 Homo sapiens Q3MHD2 32296183
种属内
LSM3 P62310 LSM12 Homo sapiens Q3MHD2 32296183
种属内
LSM3 P62310 DDIT4L Homo sapiens Q96D03 32296183
种属内
LSM3 P62310 DDIT4L Homo sapiens Q96D03 32296183
种属内
LSM3 P62310 DDIT4L Homo sapiens Q96D03 32296183
种属内
LSM3 P62310 TCL1A Homo sapiens P56279 25416956
种属内
LSM3 P62310 KEAP1 Homo sapiens Q14145 32296183
种属内
LSM3 P62310 KEAP1 Homo sapiens Q14145 25416956
种属内
LSM3 P62310 KEAP1 Homo sapiens Q14145 32296183
种属内
LSM3 P62310 KEAP1 Homo sapiens Q14145 25416956
种属内
LSM3 P62310 KEAP1 Homo sapiens Q14145 32296183
种属内
LSM3 P62310 NACC1 Homo sapiens Q96RE7 32296183
种属内
LSM3 P62310 NACC1 Homo sapiens Q96RE7 32296183
种属内
LSM3 P62310 NACC1 Homo sapiens Q96RE7 32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

重组 LSM3 蛋白

目录号 产品名 蛋白编号 纯度
HY-P75915 LSM3 Protein, Human (His) P62310 /NP_055278.1(M1-G102) ≥ 95%, as determined by reducing SDS-PAGE.

关联疾病

疾病名称 别名
Coffin-Siris Syndrome 3

CSS3

Mrd15

Mental Retardation, Autosomal Dominant 15

Autosomal Dominant Mental Retardation 15

Coffin-Siris Syndrome, Type 3

Spondylolysis

Acquired Spondylolysis

Spinal Muscular Atrophy

Sma

5q Sma

Proximal Sma

Sma-Associated Sma

Spinal Amyotrophies

Spinal Amyotrophy

Spinal Muscle Degeneration

Spinal Muscle Wasting

Muscular Atrophy Spinal

Atrophy, Muscular, Spinal

Hereditary Motor Neuronopathy

Progressive Muscular Atrophy

Sma - [Spinal Muscular Atrophy]

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus LSM3 RGD RGD:1305971
Bos taurus LSM3 VGNC VGNC:31055
Canis familiaris LSM3 VGNC VGNC:42843
Mus musculus LSM3 MGD MGI:1914928
Others LSM3 NCBI