1. Academic Validation
  2. Design, synthesis, and biological evaluation of novel hydrophobic tag-based degraders targeting JNK1

Design, synthesis, and biological evaluation of novel hydrophobic tag-based degraders targeting JNK1

  • Bioorg Chem. 2026 Jun 15:174:109756. doi: 10.1016/j.bioorg.2026.109756.
Yi Huang 1 Man Chi 2 Ye Zhang 2 Weiqi Cai 2 Weiwei Huang 3 Shuhua Ren 4 Wenjing Gu 4 Yaxia Yuan 5 Shurong Hou 6 Lei Ma 7 Xiabin Chen 8
Affiliations

Affiliations

  • 1 State Key Laboratory of Analytical Chemistry for Life Science, Chemistry and Biomedicine Innovation Center (ChemBIC), School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, Jiangsu 210023, China; School of Pharmacy, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China; Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines; Engineering Laboratory of Development and Application of Traditional Chinese Medicines; Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China. Electronic address: 20243016@hznu.edu.cn.
  • 2 School of Pharmacy, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China; Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines; Engineering Laboratory of Development and Application of Traditional Chinese Medicines; Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China.
  • 3 Hangzhou Matrix Biopharmaceutical Co., Ltd, Hangzhou, Zhejiang 311121, China.
  • 4 Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China.
  • 5 Department of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, TX 78229, USA.
  • 6 School of Pharmacy, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China; Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines; Engineering Laboratory of Development and Application of Traditional Chinese Medicines; Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China. Electronic address: houshurong@hznu.edu.cn.
  • 7 Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, China. Electronic address: malei@ecust.edu.cn.
  • 8 School of Pharmacy, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China; Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines; Engineering Laboratory of Development and Application of Traditional Chinese Medicines; Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University, Hangzhou, Zhejiang 311121, China. Electronic address: xch226@hznu.edu.cn.
Abstract

The epithelial-mesenchymal transition (EMT) plays a pivotal role in embryonic development and tissue repair. However, dysregulated EMT contributes to fibrotic disorders and Cancer metastasis. JNK1 is recognized as a core regulator of TGF-β-induced EMT, positioning it as a therapeutic target for EMT-associated pathologies. Here, we report the first application of hydrophobic tag (HyT) technology, a targeted protein degradation (TPD) strategy, to develop JNK1 degraders. A series of HyT-based degraders was designed and synthesized by conjugating the JNK1 Inhibitor A3 to structurally distinct hydrophobic moieties. Compound HY12 emerged as a potent degrader, inducing dose- and time-dependent JNK1 degradation. Mechanistic studies revealed that both the ubiquitin-proteasome system (UPS) and the autophagy-lysosome pathway contribute to HY12-mediated JNK1 degradation. Furthermore, HY12 effectively inhibited TGF-β1-induced EMT. This work establishes a novel HyT-mediated JNK1 degradation platform and provides a promising therapeutic strategy for EMT-associated disorders.

Keywords

C-Jun N-terminal kinase; Epithelial-mesenchymal transition; Hydrophobic tagging; Protein degradation.

Figures
Products